PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0402s0002.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 210aa    MW: 23201.8 Da    PI: 8.3951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0402s0002.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-0651661126
                          GTS--TTTTT-SS-SS CS
               zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                          + G+C++Gd+C+ +Hg
  Sphfalx0402s0002.3.p 51 AAGICPRGDNCPQIHG 66
                          67*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.109.0E-792170IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.12E-893174No hitNo description
PROSITE profilePS500898.963110168IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MASAGCYATS SCMERVSNEK IACSLIAGVT RLARYAHFIS VAFVLMAVVA AAGICPRGDN  60
CPQIHGDLCP TCGKHCLHPF RPSERDNHRQ QRERNQKKLE TLRKSQDIEC SVCLERVLSK  120
PTVAERKFGL MSGRDHPFCV GCIRGWRSGS HAPGMDIDTV VRACPVCQVT SHFIVPSVVW  180
YSSSEEKEDI INGYKNKLSI CLEMEVGRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001772740.17e-86predicted protein, partial
SwissprotQ5ZA074e-68C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS63e-68C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA9T2C77e-86A9T2C7_PHYPA; Predicted protein (Fragment)
STRINGPP1S154_11V6.13e-85(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-67C3H family protein